acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
Lux, Markus ; Krüger, Jan ; Rinke, Christian ; Maus, Irena ; Schlüter, Andreas ; Woyke, Tanja ; Sczyrba, Alexander ; Hammer, BarbaraIn: BMC Bioinformatics, Vol. 17 Issue 1AGenDA: gene prediction by cross-species sequence comparison
Taher, L ; Rinner, O ; Garg, S ; Sczyrba, Alexander ; Morgenstern, BIn: Nucleic Acids Research, Vol. 32 Issue Web Server, page W305-W308ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom
Moore, Marten ; Wesemann, Corinna ; Gossmann, Nikolaj ; Sahm, Arne ; Krüger, Jan ; Sczyrba, Alexander ; Dietz, Karl-JosefIn: BMC Bioinformatics, Vol. 21 Issue 1de.NBI Cloud federation through ELIXIR AAI
Belmann, Peter ; Fischer, Björn ; Krüger, Jan ; Procházka, Michal ; Rasche, Helena ; Prinz, Manuel ; Hanussek, Maximilian ; Lang, Martin ; Bartusch, Felix ; Gläßle, Benjamin ; Krüger, Jens ; Pühler, Alfred ; Sczyrba, AlexanderIn: F1000Research, Vol. 8Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges, Andreas ; Maus, Irena ; Belmann, Peter ; Eikmeyer, Felix Gregor ; Winkler, Anika ; Albersmeier, Andreas ; Pühler, Alfred ; Schlüter, Andreas ; Sczyrba, AlexanderIn: GigaScience, Vol. 4 Issue 1e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences
Krüger, Jan ; Sczyrba, Alexander ; Kurtz, Stefan ; Giegerich, RobertIn: NUCLEIC ACIDS RESEARCH, Vol. 32 Issue Web Server, page W301-W304Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted [...]
Nelkner, Johanna ; Henke, Christian ; Lin, Timo Wentong ; Pätzold, Wiebke ; Hassa, Julia ; Jaenicke, Sebastian ; Grosch, Rita ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Genes, Vol. 10 Issue 6GeneFisher-P: variations of GeneFisher as processes in Bio-jETI
Lamprecht, Anna-Lena ; Margaria, Tiziana ; Steffen, Bernhard ; Sczyrba, Alexander ; Hartmeier, Sven ; Giegerich, RobertIn: BMC Bioinformatics, Vol. 9 Issue Suppl 4Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes
Maus, Irena ; Bremges, Andreas ; Stolze, Yvonne ; Hahnke, Sarah ; Cibis, Katharina G. ; Koeck, Daniela E. ; Kim, Yong S. ; Kreubel, Jana ; Hassa, Julia ; Wibberg, Daniel ; Weimann, Aaron ; Off, Sandra ; Stantscheff, Robbin ; Zverlov, Vladimir V. ; Schwarz, Wolfgang H. ; König, Helmut ; Liebl, Wolfgang ; Scherer, Paul ; McHardy, Alice C. ; Sczyrba, Alexander [...]In: Biotechnology for Biofuels, Vol. 10 Issue 1Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas p [...]
Stolze, Yvonne ; Bremges, Andreas ; Rumming, Madis ; Henke, Christian ; Maus, Irena ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Biotechnology for Biofuels, Vol. 9 Issue 1Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable Agriculture
Tabacchioni, Silvia ; Passato, Stefania ; Ambrosino, Patrizia ; Huang, Liren ; Caldara, Marina ; Cantale, Cristina ; Hett, Jonas ; Del Fiore, Antonella ; Fiore, Alessia ; Schlüter, Andreas ; Sczyrba, Alexander ; Maestri, Elena ; Marmiroli, Nelson ; Neuhoff, Daniel ; Nesme, Joseph ; Sørensen, Søren Johannes ; Aprea, Giuseppe ; Nobili, Chiara ; Presenti, Ombretta ; Giovannetti, Giusto [...]In: Microorganisms, Vol. 9 Issue 2Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed [...]
Maus, Irena ; Klocke, Michael ; Derenkó, Jaqueline ; Stolze, Yvonne ; Beckstette, Michael ; Jost, Carsten ; Wibberg, Daniel ; Blom, Jochen ; Henke, Christian ; Willenbücher, Katharina ; Rumming, Madis ; Rademacher, Antje ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Environmental Microbiome, Vol. 15 Issue 1Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum
Rettenmaier, Regina ; Schneider, Martina ; Munk, Bernhard ; Lebuhn, Michael ; Jünemann, Sebastian ; Sczyrba, Alexander ; Maus, Irena ; Zverlov, Vladimir ; Liebl, WolfgangIn: Microorganisms, Vol. 8 Issue 6IsoSVM - Distinguishing isoforms and paralogs on the protein level
Spitzer, M ; Lorkowski, S ; Cullen, P ; Sczyrba, Alexander ; Fuellen, GeorgIn: BMC Bioinformatics, Vol. 7 Issue 1, page 110 et seq.Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines
Brandt, David ; Simunovic, Marina ; Busche, Tobias ; Haak, Markus ; Belmann, Peter ; Jünemann, Sebastian ; Schulz, Tizian ; Klages, Levin Joe ; Vinke, Svenja ; Beckstette, Michael ; Pohl, Ehmke ; Scherer, Christiane ; Sczyrba, Alexander ; Kalinowski, JörnIn: Viruses, Vol. 13 Issue 9